installation errors, Permission denied
Posted: Fri Oct 20, 2006 3:38 am
&| Dear VASP users
I'm installing parallel version vasp4.6 on my linux P4 cluster computer.
Redhat linux and pgf90 compiler had supported and I successfully had installed BLACS and SCALAPACK.
Following errors are occured during vasp installation
I tried to change linux shell, but it was not solved.
./preprocess <base.F | /usr/bin/cpp -P -C -traditional >base.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c base.f90
./preprocess <mpi.F | /usr/bin/cpp -P -C -traditional >mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission deniedmpif90 -O3 -c mpi.f90
./preprocess <smart_allocate.F | /usr/bin/cpp -P -C -traditional >smart_allocate.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c smart_allocate.f90
./preprocess <xml.F | /usr/bin/cpp -P -C -traditional >xml.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c xml.f90
./preprocess <constant.F | /usr/bin/cpp -P -C -traditional >constant.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c constant.f90
./preprocess <jacobi.F | /usr/bin/cpp -P -C -traditional >jacobi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c jacobi.f90
./preprocess <main_mpi.F | /usr/bin/cpp -P -C -traditional >main_mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
.
.
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mpif90 -O0 -c main.f90
rm -f vasp
mpif90 -o vasp main.o base.o mpi.o smart_allocate.o xml.o constant.o jacobi.o main_mpi.o scala.o asa.o lattice.o poscar.o ini.o setex.o radial.o pseudo.o mgrid.o mkpoints.o wave.o wave_mpi.o symmetry.o symlib.o lattlib.o random.o nonl.o nonlr.o dfast.o choleski2.o mix.o charge.o xcgrad.o xcspin.o potex1.o potex2.o metagga.o constrmag.o pot.o cl_shift.o force.o dos.o elf.o tet.o hamil.o steep.o chain.o dyna.o relativistic.o LDApU.o sphpro.o paw.o us.o ebs.o wavpre.o wavpre_noio.o broyden.o dynbr.o rmm-diis.o reader.o writer.o tutor.o xml_writer.o brent.o stufak.o fileio.o opergrid.o stepver.o dipol.o xclib.o chgloc.o subrot.o optreal.o davidson.o edtest.o electron.o shm.o pardens.o paircorrection.o optics.o constr_cell_relax.o stm.o finite_diff.o elpol.o setlocalpp.o fftmpiw.o fftmpi_map.o fft3dlib.o /home/inflames/lib/lib/libfftw3.a -L../vasp.4.lib -ldmy ../vasp.4.lib/linpack_double.o ../vasp.4.lib/lapack_double.o /home/inflames/lib/blas_LINUX.a
/usr/bin/ld: cannot open main.o: No such file or directory
make: *** [vasp] Error 2
Why all "permission denied" massages are appeare??
and What is the meaning of the final error??
Though I'm a starter, I think these errors are not significant. Probably just due to some mishandled makefiles or settings.
Please check the errors and let me know what was wrong.
I'm installing parallel version vasp4.6 on my linux P4 cluster computer.
Redhat linux and pgf90 compiler had supported and I successfully had installed BLACS and SCALAPACK.
Following errors are occured during vasp installation
I tried to change linux shell, but it was not solved.
./preprocess <base.F | /usr/bin/cpp -P -C -traditional >base.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c base.f90
./preprocess <mpi.F | /usr/bin/cpp -P -C -traditional >mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission deniedmpif90 -O3 -c mpi.f90
./preprocess <smart_allocate.F | /usr/bin/cpp -P -C -traditional >smart_allocate.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c smart_allocate.f90
./preprocess <xml.F | /usr/bin/cpp -P -C -traditional >xml.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c xml.f90
./preprocess <constant.F | /usr/bin/cpp -P -C -traditional >constant.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c constant.f90
./preprocess <jacobi.F | /usr/bin/cpp -P -C -traditional >jacobi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c jacobi.f90
./preprocess <main_mpi.F | /usr/bin/cpp -P -C -traditional >main_mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
.
.
.
mpif90 -O0 -c main.f90
rm -f vasp
mpif90 -o vasp main.o base.o mpi.o smart_allocate.o xml.o constant.o jacobi.o main_mpi.o scala.o asa.o lattice.o poscar.o ini.o setex.o radial.o pseudo.o mgrid.o mkpoints.o wave.o wave_mpi.o symmetry.o symlib.o lattlib.o random.o nonl.o nonlr.o dfast.o choleski2.o mix.o charge.o xcgrad.o xcspin.o potex1.o potex2.o metagga.o constrmag.o pot.o cl_shift.o force.o dos.o elf.o tet.o hamil.o steep.o chain.o dyna.o relativistic.o LDApU.o sphpro.o paw.o us.o ebs.o wavpre.o wavpre_noio.o broyden.o dynbr.o rmm-diis.o reader.o writer.o tutor.o xml_writer.o brent.o stufak.o fileio.o opergrid.o stepver.o dipol.o xclib.o chgloc.o subrot.o optreal.o davidson.o edtest.o electron.o shm.o pardens.o paircorrection.o optics.o constr_cell_relax.o stm.o finite_diff.o elpol.o setlocalpp.o fftmpiw.o fftmpi_map.o fft3dlib.o /home/inflames/lib/lib/libfftw3.a -L../vasp.4.lib -ldmy ../vasp.4.lib/linpack_double.o ../vasp.4.lib/lapack_double.o /home/inflames/lib/blas_LINUX.a
/usr/bin/ld: cannot open main.o: No such file or directory
make: *** [vasp] Error 2
Why all "permission denied" massages are appeare??
and What is the meaning of the final error??
Though I'm a starter, I think these errors are not significant. Probably just due to some mishandled makefiles or settings.
Please check the errors and let me know what was wrong.