&| Dear VASP users
I'm installing parallel version vasp4.6 on my linux P4 cluster computer.
Redhat linux and pgf90 compiler had supported and I successfully had installed BLACS and SCALAPACK.
Following errors are occured during vasp installation
I tried to change linux shell, but it was not solved.
./preprocess <base.F | /usr/bin/cpp -P -C -traditional >base.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c base.f90
./preprocess <mpi.F | /usr/bin/cpp -P -C -traditional >mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission deniedmpif90 -O3 -c mpi.f90
./preprocess <smart_allocate.F | /usr/bin/cpp -P -C -traditional >smart_allocate.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c smart_allocate.f90
./preprocess <xml.F | /usr/bin/cpp -P -C -traditional >xml.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c xml.f90
./preprocess <constant.F | /usr/bin/cpp -P -C -traditional >constant.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c constant.f90
./preprocess <jacobi.F | /usr/bin/cpp -P -C -traditional >jacobi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c jacobi.f90
./preprocess <main_mpi.F | /usr/bin/cpp -P -C -traditional >main_mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
.
.
.
mpif90 -O0 -c main.f90
rm -f vasp
mpif90 -o vasp main.o base.o mpi.o smart_allocate.o xml.o constant.o jacobi.o main_mpi.o scala.o asa.o lattice.o poscar.o ini.o setex.o radial.o pseudo.o mgrid.o mkpoints.o wave.o wave_mpi.o symmetry.o symlib.o lattlib.o random.o nonl.o nonlr.o dfast.o choleski2.o mix.o charge.o xcgrad.o xcspin.o potex1.o potex2.o metagga.o constrmag.o pot.o cl_shift.o force.o dos.o elf.o tet.o hamil.o steep.o chain.o dyna.o relativistic.o LDApU.o sphpro.o paw.o us.o ebs.o wavpre.o wavpre_noio.o broyden.o dynbr.o rmm-diis.o reader.o writer.o tutor.o xml_writer.o brent.o stufak.o fileio.o opergrid.o stepver.o dipol.o xclib.o chgloc.o subrot.o optreal.o davidson.o edtest.o electron.o shm.o pardens.o paircorrection.o optics.o constr_cell_relax.o stm.o finite_diff.o elpol.o setlocalpp.o fftmpiw.o fftmpi_map.o fft3dlib.o /home/inflames/lib/lib/libfftw3.a -L../vasp.4.lib -ldmy ../vasp.4.lib/linpack_double.o ../vasp.4.lib/lapack_double.o /home/inflames/lib/blas_LINUX.a
/usr/bin/ld: cannot open main.o: No such file or directory
make: *** [vasp] Error 2
Why all "permission denied" massages are appeare??
and What is the meaning of the final error??
Though I'm a starter, I think these errors are not significant. Probably just due to some mishandled makefiles or settings.
Please check the errors and let me know what was wrong.
installation errors, Permission denied
Moderators: Global Moderator, Moderator
installation errors, Permission denied
Last edited by neogien on Fri Oct 20, 2006 3:38 am, edited 1 time in total.
-
- Newbie
- Posts: 20
- Joined: Tue Oct 17, 2006 2:08 pm
- License Nr.: FA513901
- Location: Karlsruhe, Germany
installation errors, Permission denied
These errors are significant: preprocessing and compilation failed.
Try to change to vasp directory and run commandsIf sucessful you will see that permission to execute was changed. Then try to run make once again.
Try to change to vasp directory and run commands
Code: Select all
ls -l ./preprocess
chmod u+x ./preprocess
ls -l ./preprocess
Last edited by pavel on Fri Oct 20, 2006 8:55 am, edited 1 time in total.
installation errors, Permission denied
Thank you!! Mr. Pavel.
Permission problems are probably solved.
However, there are still some problems as follows.
./preprocess <base.F | /usr/bin/cpp -P -C -traditional >base.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c base.f90
./preprocess <mpi.F | /usr/bin/cpp -P -C -traditional >mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c mpi.f90
./preprocess <smart_allocate.F | /usr/bin/cpp -P -C -traditional >smart_allocate.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c smart_allocate.f90
./preprocess <xml.F | /usr/bin/cpp -P -C -traditional >xml.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c xml.f90
PGF90-S-0034-Syntax error at or near end of line (xml.f90: 1545)
PGF90/any Linux/x86 5.2-4: compilation completed with severe errors
make: *** [xml.o] Error 2
I wonder it is due to my poor base on the Linux system.
Can it be solved easily? or Should I ask advice of my machine concultant?
Permission problems are probably solved.
However, there are still some problems as follows.
./preprocess <base.F | /usr/bin/cpp -P -C -traditional >base.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c base.f90
./preprocess <mpi.F | /usr/bin/cpp -P -C -traditional >mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c mpi.f90
./preprocess <smart_allocate.F | /usr/bin/cpp -P -C -traditional >smart_allocate.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c smart_allocate.f90
./preprocess <xml.F | /usr/bin/cpp -P -C -traditional >xml.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c xml.f90
PGF90-S-0034-Syntax error at or near end of line (xml.f90: 1545)
PGF90/any Linux/x86 5.2-4: compilation completed with severe errors
make: *** [xml.o] Error 2
I wonder it is due to my poor base on the Linux system.
Can it be solved easily? or Should I ask advice of my machine concultant?
Last edited by neogien on Mon Oct 23, 2006 5:57 am, edited 1 time in total.
-
- Administrator
- Posts: 2921
- Joined: Tue Aug 03, 2004 8:18 am
- License Nr.: 458
installation errors, Permission denied
please have a look at line 1545 of xml.f90. I am not aware that this ever caused compilation problems. Please check if the pre-compiler produced a reasonable .f90 file
Last edited by admin on Tue Oct 24, 2006 11:47 am, edited 1 time in total.